rs2227945
From SNPedia
Orientation | minus |
Stabilized | minus |
Geno | Mag | Summary |
---|---|---|
(A;A) | 0 | common in complete genomics |
(G;G) | 2 | |
(T;T) | 0 |
Make rs2227945(A;G) |
Reference | GRCh38 38.1/142 |
Chromosome | 17 |
Position | 43092113 |
Gene | BRCA1 |
is a | snp |
is | mentioned by |
dbSNP | rs2227945 |
dbSNP (classic) | rs2227945 |
ClinGen | rs2227945 |
ebi | rs2227945 |
HLI | rs2227945 |
Exac | rs2227945 |
Gnomad | rs2227945 |
Varsome | rs2227945 |
LitVar | rs2227945 |
Map | rs2227945 |
PheGenI | rs2227945 |
Biobank | rs2227945 |
1000 genomes | rs2227945 |
hgdp | rs2227945 |
ensembl | rs2227945 |
geneview | rs2227945 |
scholar | rs2227945 |
rs2227945 | |
pharmgkb | rs2227945 |
gwascentral | rs2227945 |
openSNP | rs2227945 |
23andMe | rs2227945 |
SNPshot | rs2227945 |
SNPdbe | rs2227945 |
MSV3d | rs2227945 |
GWAS Ctlg | rs2227945 |
GMAF | 0.01102 |
Max Magnitude | 2 |
? | (A;A) (A;G) (G;G) | 28 |
---|---|---|
|
This SNP, a variant in the BRCA1 gene, is 1 of 25 SNPs reported to represent independently minor, but cumulatively significant, increased risk for breast cancer. [PMID 17341484]
For details of all 25 SNPs in this group, along with the two methods used to calculate overall risk estimates for breast cancer, refer to the SNPedia breast cancer entry.
For this particular SNP, the risk (minor) allele is (G).
ClinVar | |
---|---|
Risk | Rs2227945(G;G) |
Alt | Rs2227945(G;G) |
Reference | Rs2227945(A;A) |
Significance | Other |
Disease | not provided Hereditary breast and ovarian cancer syndrome Breast-ovarian cancer not specified Hereditary cancer-predisposing syndrome |
Variation | info |
Gene | BRCA1 |
CLNDBN | not provided Hereditary breast and ovarian cancer syndrome Breast-ovarian cancer, familial 1 not specified Hereditary cancer-predisposing syndrome |
Reversed | 1 |
HGVS | NC_000017.10:g.41244130T>C |
CLNSRC | Database of BRCA1 and BRCA2 sequence variants that have been clinically reclassified by a quantitative integrated evaluation UniProtKB (protein) |
CLNACC | RCV000034741.3, RCV000048187.9, RCV000112092.5, RCV000120277.7, RCV000162594.1, |