rs28934577
From SNPedia
| Orientation | minus |
| Stabilized | minus |
| Geno | Mag | Summary |
|---|---|---|
| (A;A) | 0 | |
| (A;T) | 6 | pathogenic/causal mutation for Li-Fraumeni syndrome |
| (G;T) | 7 | Li-Fraumeni Syndrome (predicted) |
| (T;T) | 0 | common in clinvar |
| Reference | GRCh38 38.1/141 |
| Chromosome | 17 |
| Position | 7674193 |
| Gene | TP53 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs28934577 |
| dbSNP (classic) | rs28934577 |
| ClinGen | rs28934577 |
| ebi | rs28934577 |
| HLI | rs28934577 |
| Exac | rs28934577 |
| Gnomad | rs28934577 |
| Varsome | rs28934577 |
| LitVar | rs28934577 |
| Map | rs28934577 |
| PheGenI | rs28934577 |
| Biobank | rs28934577 |
| 1000 genomes | rs28934577 |
| hgdp | rs28934577 |
| ensembl | rs28934577 |
| geneview | rs28934577 |
| scholar | rs28934577 |
| rs28934577 | |
| pharmgkb | rs28934577 |
| gwascentral | rs28934577 |
| openSNP | rs28934577 |
| 23andMe | rs28934577 |
| SNPshot | rs28934577 |
| SNPdbe | rs28934577 |
| MSV3d | rs28934577 |
| GWAS Ctlg | rs28934577 |
| Max Magnitude | 7 |
rs28934577, also known as Leu257Gln or L257Q, is a SNP in the p53 TP53 tumor suppressor gene.
The rare rs28934577(A) allele is associated with predisposition to cancer in the form of Li-Fraumeni syndrome 1.[PMID 8134127]
ClinVar annotates this as both pathogenic, and, "likely pathogenic"; see also OMIM 191170.0028
This variant meets the criteria published in 2013 by the ACMG regarding incidental findings in exome or genome sequencing, as a variant that they do recommend informing a patient about.[PMID 23788249
]
| ClinVar | |
|---|---|
| Risk | Rs28934577(A;A) rs28934577(G;G) |
| Alt | Rs28934577(A;A) rs28934577(G;G) |
| Reference | Rs28934577(T;T) |
| Significance | Pathogenic |
| Disease | Hereditary cancer-predisposing syndrome Li-Fraumeni-like syndrome Li-Fraumeni syndrome |
| Variation | info |
| Gene | TP53 |
| CLNDBN | Hereditary cancer-predisposing syndrome Li-Fraumeni-like syndrome Li-Fraumeni syndrome |
| Reversed | 1 |
| HGVS | NC_000017.10:g.7577511A>C; NC_000017.10:g.7577511A>T |
| CLNSRC | UniProtKB (protein) OMIM Allelic Variant |
| CLNACC | RCV000130981.2, RCV000013171.20, RCV000469142.1, |
