rs28934873
From SNPedia
Orientation | minus |
Stabilized | minus |
Geno | Mag | Summary |
---|---|---|
(C;T) | 7 | Li-Fraumeni Syndrome (predicted) |
(T;T) | 0 | common in clinvar |
Make rs28934873(C;C) |
Reference | GRCh38 38.1/141 |
Chromosome | 17 |
Position | 7675214 |
Gene | TP53 |
is a | snp |
is | mentioned by |
dbSNP | rs28934873 |
dbSNP (classic) | rs28934873 |
ClinGen | rs28934873 |
ebi | rs28934873 |
HLI | rs28934873 |
Exac | rs28934873 |
Gnomad | rs28934873 |
Varsome | rs28934873 |
LitVar | rs28934873 |
Map | rs28934873 |
PheGenI | rs28934873 |
Biobank | rs28934873 |
1000 genomes | rs28934873 |
hgdp | rs28934873 |
ensembl | rs28934873 |
geneview | rs28934873 |
scholar | rs28934873 |
rs28934873 | |
pharmgkb | rs28934873 |
gwascentral | rs28934873 |
openSNP | rs28934873 |
23andMe | rs28934873 |
SNPshot | rs28934873 |
SNPdbe | rs28934873 |
MSV3d | rs28934873 |
GWAS Ctlg | rs28934873 |
Max Magnitude | 7 |
rs28934573, also known as Met133Thr or M133T, is a SNP in the p53 TP53 tumor suppressor gene.
The rare rs28934573(C) allele is associated with predisposition to cancer in the form of Li-Fraumeni syndrome 1.[PMID 1933902]
This allele is considered pathogenic (causal) in ClinVar; see also OMIM 191170.0011.
This variant meets the criteria published in 2013 by the ACMG regarding incidental findings in exome or genome sequencing, as a variant that they do recommend informing a patient about.[PMID 23788249]
ClinVar | |
---|---|
Risk | rs28934873(C;C) |
Alt | rs28934873(C;C) |
Reference | Rs28934873(T;T) |
Significance | Pathogenic |
Disease | Li-Fraumeni syndrome 1 Hereditary cancer-predisposing syndrome |
Variation | info |
Gene | TP53 |
CLNDBN | Li-Fraumeni syndrome 1 Hereditary cancer-predisposing syndrome |
Reversed | 1 |
HGVS | NC_000017.10:g.7578532A>G |
CLNSRC | OMIM Allelic Variant UniProtKB (protein) |
CLNACC | RCV000013151.22, RCV000492130.1, |