rs3099844

Orientation

plus

Stabilized

plus

Make rs3099844(A;A)

Make rs3099844(A;C)

Make rs3099844(C;C)

Reference

GRCh38 38.1/141

Chromosome

6

Position

31481199

Gene	LOC102725068

is a	snp
is	mentioned by
dbSNP	rs3099844
dbSNP (classic)	rs3099844
ClinGen	rs3099844
ebi	rs3099844
HLI	rs3099844
Exac	rs3099844
Gnomad	rs3099844
Varsome	rs3099844
LitVar	rs3099844
Map	rs3099844
PheGenI	rs3099844
Biobank	rs3099844
1000 genomes	rs3099844
hgdp	rs3099844
ensembl	rs3099844
geneview	rs3099844
scholar	rs3099844
google	rs3099844
pharmgkb	rs3099844
gwascentral	rs3099844
openSNP	rs3099844
23andMe	rs3099844
SNPshot	rs3099844
SNPdbe	rs3099844
MSV3d	rs3099844
GWAS Ctlg	rs3099844

GMAF

0.0854

Max Magnitude

0

?

(A;A) (A;C) (C;C)

28

[PMID 19944697] Genome-wide association analysis in primary sclerosing cholangitis

[PMID 20662065 ] Genome-wide association study of cardiac manifestations of neonatal lupus identifies candidate loci at 6p21 and 21q22

GWAS snp
PMID	[PMID 22399527 ]
Trait
Title	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.
Risk Allele	A
P-val	2E-8
Odds Ratio	0.1500 None

[PMID 18204098] Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.

[PMID 18309376 ] Several regions in the major histocompatibility complex confer risk for anti-CCP-antibody positive rheumatoid arthritis, independent of the DRB1 locus.

[PMID 19197363 ] A genome-wide investigation of SNPs and CNVs in schizophrenia.

[PMID 19853236 ] Sequence variants in three loci influence monocyte counts and erythrocyte volume.

[PMID 20017995 ] A principal-components-based clustering method to identify multiple variants associated with rheumatoid arthritis and arthritis-related autoantibodies.

[PMID 20437058 ] The utility and predictive value of combinations of low penetrance genes for screening and risk prediction of colorectal cancer.

[PMID 24322967] HCP5 genetic variant (RS3099844) contributes to Nevirapine-induced Stevens Johnsons Syndrome/Toxic Epidermal Necrolysis susceptibility in a population from Mozambique

[PMID 30882006 ] STAT4, TRAF3IP2, IL10, and HCP5 Polymorphisms in Sjögren's Syndrome: Association with Disease Susceptibility and Clinical Aspects.