rs3117582
Orientation | minus |
Stabilized | minus |
Geno | Mag | Summary |
---|---|---|
(A;A) | 0 | common on affy axiom data |
(C;C) | 2 | increased lung cancer risk |
Make rs3117582(A;C) |
Reference | GRCh38 38.1/141 |
Chromosome | 6 |
Position | 31652743 |
Gene | APOM, BAG6 |
is a | snp |
is | mentioned by |
dbSNP | rs3117582 |
dbSNP (classic) | rs3117582 |
ClinGen | rs3117582 |
ebi | rs3117582 |
HLI | rs3117582 |
Exac | rs3117582 |
Gnomad | rs3117582 |
Varsome | rs3117582 |
LitVar | rs3117582 |
Map | rs3117582 |
PheGenI | rs3117582 |
Biobank | rs3117582 |
1000 genomes | rs3117582 |
hgdp | rs3117582 |
ensembl | rs3117582 |
geneview | rs3117582 |
scholar | rs3117582 |
rs3117582 | |
pharmgkb | rs3117582 |
gwascentral | rs3117582 |
openSNP | rs3117582 |
23andMe | rs3117582 |
SNPshot | rs3117582 |
SNPdbe | rs3117582 |
MSV3d | rs3117582 |
GWAS Ctlg | rs3117582 |
GMAF | 0.03857 |
Max Magnitude | 2 |
? | (A;A) (A;C) (C;C) | 28 |
---|---|---|
|
[PMID 18978787] lung cancer rs3117582 P = 4.97 x 10(-10)
[PMID 19654303] Deciphering the Impact of Common Genetic Variation on Lung Cancer Risk: A Genome-Wide Association Study
GWAS snp | |
---|---|
PMID | [PMID 19836008] |
Trait | Lung adenocarcinoma |
Title | A Genome-wide Association Study of Lung Cancer Identifies a Region of Chromosome 5p15 Associated with Risk for Adenocarcinoma |
Risk Allele | C |
P-val | 5E-12 |
Odds Ratio | 1.22 [1.15-1.29] |
[PMID 20142248] Cumulative effect of multiple Loci on genetic susceptibility to familial lung cancer
[PMID 19423719] Update in lung cancer 2008.
[PMID 19474294] Potential etiologic and functional implications of genome-wide association loci for human diseases and traits.
[PMID 19955392] Role of 5p15.33 (TERT-CLPTM1L), 6p21.33 and 15q25.1 (CHRNA5-CHRNA3) variation and lung cancer risk in never-smokers.
[PMID 25231575] Susceptibility to large-joint osteoarthritis (hip and knee) is associated with BAG6 rs3117582 SNP and the VNTR polymorphism in the second exon of the FAM46A gene on chromosome 6
[PMID 25884493] Association of the FAM46A Gene VNTRs and BAG6 rs3117582 SNP with Non Small Cell Lung Cancer (NSCLC) in Croatian and Norwegian Populations