rs3117582

minus

Geno	Mag	Summary
(A;A)	0	common on affy axiom data
(C;C)	2	increased lung cancer risk

Make rs3117582(A;C)

Reference

GRCh38 38.1/141

Chromosome

6

Position

31652743

Gene	APOM, BAG6

is a	snp
is	mentioned by
dbSNP	rs3117582
dbSNP (classic)	rs3117582
ClinGen	rs3117582
ebi	rs3117582
HLI	rs3117582
Exac	rs3117582
Gnomad	rs3117582
Varsome	rs3117582
LitVar	rs3117582
Map	rs3117582
PheGenI	rs3117582
Biobank	rs3117582
1000 genomes	rs3117582
hgdp	rs3117582
ensembl	rs3117582
geneview	rs3117582
scholar	rs3117582
google	rs3117582
pharmgkb	rs3117582
gwascentral	rs3117582
openSNP	rs3117582
23andMe	rs3117582
SNPshot	rs3117582
SNPdbe	rs3117582
MSV3d	rs3117582
GWAS Ctlg	rs3117582

GMAF

0.03857

Max Magnitude

2

?

(A;A) (A;C) (C;C)

28

[PMID 18978787 ] lung cancer rs3117582 P = 4.97 x 10(-10)

OMIM	612593
Desc	LUNG CANCER SUSCEPTIBILITY 4; LNCR4
Variant
Related	also

[PMID 19654303 ] Deciphering the Impact of Common Genetic Variation on Lung Cancer Risk: A Genome-Wide Association Study

GWAS snp
PMID	[PMID 19836008 ]
Trait	Lung adenocarcinoma
Title	A Genome-wide Association Study of Lung Cancer Identifies a Region of Chromosome 5p15 Associated with Risk for Adenocarcinoma
Risk Allele	C
P-val	5E-12
Odds Ratio	1.22 [1.15-1.29]

[PMID 20142248 ] Cumulative effect of multiple Loci on genetic susceptibility to familial lung cancer

[PMID 19423719 ] Update in lung cancer 2008.

[PMID 19474294 ] Potential etiologic and functional implications of genome-wide association loci for human diseases and traits.

[PMID 19955392] Role of 5p15.33 (TERT-CLPTM1L), 6p21.33 and 15q25.1 (CHRNA5-CHRNA3) variation and lung cancer risk in never-smokers.

[PMID 25231575] Susceptibility to large-joint osteoarthritis (hip and knee) is associated with BAG6 rs3117582 SNP and the VNTR polymorphism in the second exon of the FAM46A gene on chromosome 6

[PMID 25884493 ] Association of the FAM46A Gene VNTRs and BAG6 rs3117582 SNP with Non Small Cell Lung Cancer (NSCLC) in Croatian and Norwegian Populations