rs3843763
From SNPedia
| lower HDL cholesterol |
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (C;C) | 1.6 | Normal (higher) HDL "Good" Cholesterol. |
| (C;T) | 1.5 | Slightly lower HDL ("Good") Cholesterol. |
| (T;T) | 1.9 | Slightly lower HDL ("Good") Cholesterol. |
| Reference | GRCh38 38.1/141 |
| Chromosome | 20 |
| Position | 45919554 |
| Gene | PLTP |
| is a | snp |
| is | mentioned by |
| dbSNP | rs3843763 |
| dbSNP (classic) | rs3843763 |
| ClinGen | rs3843763 |
| ebi | rs3843763 |
| HLI | rs3843763 |
| Exac | rs3843763 |
| Gnomad | rs3843763 |
| Varsome | rs3843763 |
| LitVar | rs3843763 |
| Map | rs3843763 |
| PheGenI | rs3843763 |
| Biobank | rs3843763 |
| 1000 genomes | rs3843763 |
| hgdp | rs3843763 |
| ensembl | rs3843763 |
| geneview | rs3843763 |
| scholar | rs3843763 |
| rs3843763 | |
| pharmgkb | rs3843763 |
| gwascentral | rs3843763 |
| openSNP | rs3843763 |
| 23andMe | rs3843763 |
| SNPshot | rs3843763 |
| SNPdbe | rs3843763 |
| MSV3d | rs3843763 |
| GWAS Ctlg | rs3843763 |
| GMAF | 0.3182 |
| Max Magnitude | 1.9 |
The (T) allele of rs3843763 was associated with risk for lower high-density lipoprotein (HDL) cholesterol plasma levels in 3 independent population samples, including both Caucasians and African-Americans.[PMID 17952847
]
| ClinVar | |
|---|---|
| Risk | Rs3843763(T;T) |
| Alt | Rs3843763(T;T) |
| Reference | Rs3843763(C;C) |
| Significance | Other |
| Disease | High density lipoprotein cholesterol level quantitative trait locus 9 |
| Variation | info |
| Gene | |
| CLNDBN | High density lipoprotein cholesterol level quantitative trait locus 9 |
| Reversed | 0 |
| HGVS | NC_000020.10:g.44548193C>T |
| CLNSRC | OMIM Allelic Variant |
| CLNACC | RCV000014604.2, |
