rs564816
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (C;C) | 0 | common genotype |
| Make rs564816(A;A) |
| Make rs564816(A;C) |
| Reference | GRCh38.p2 38.2/144 |
| Chromosome | 9 |
| Position | 4015370 |
| Gene | GLIS3 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs564816 |
| dbSNP (classic) | rs564816 |
| ClinGen | rs564816 |
| ebi | rs564816 |
| HLI | rs564816 |
| Exac | rs564816 |
| Gnomad | rs564816 |
| Varsome | rs564816 |
| LitVar | rs564816 |
| Map | rs564816 |
| PheGenI | rs564816 |
| Biobank | rs564816 |
| 1000 genomes | rs564816 |
| hgdp | rs564816 |
| ensembl | rs564816 |
| geneview | rs564816 |
| scholar | rs564816 |
| rs564816 | |
| pharmgkb | rs564816 |
| gwascentral | rs564816 |
| openSNP | rs564816 |
| 23andMe | rs564816 |
| SNPshot | rs564816 |
| SNPdbe | rs564816 |
| MSV3d | rs564816 |
| GWAS Ctlg | rs564816 |
| Max Magnitude | 0 |
| ? | (A;A) (A;C) (C;C) | 28 |
|---|---|---|
|
| ||
| GWAS snp | |
|---|---|
| PMID | [PMID 19901119 ]
|
| Trait | Methotrexate phramacokinetics (acute lymphoblastic leukemia) |
| Title | Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects. |
| Risk Allele | C |
| P-val | 3E-7 |
| Odds Ratio | NR NR |
