rs5945572
| Associated with prostate cancer risk |
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (A;A) |
| Make rs5945572(A;G) |
| Make rs5945572(G;G) |
| Reference | GRCh38 38.1/141 |
| Chromosome | X |
| Position | 51486831 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs5945572 |
| dbSNP (classic) | rs5945572 |
| ClinGen | rs5945572 |
| ebi | rs5945572 |
| HLI | rs5945572 |
| Exac | rs5945572 |
| Gnomad | rs5945572 |
| Varsome | rs5945572 |
| LitVar | rs5945572 |
| Map | rs5945572 |
| PheGenI | rs5945572 |
| Biobank | rs5945572 |
| 1000 genomes | rs5945572 |
| hgdp | rs5945572 |
| ensembl | rs5945572 |
| geneview | rs5945572 |
| scholar | rs5945572 |
| rs5945572 | |
| pharmgkb | rs5945572 |
| gwascentral | rs5945572 |
| openSNP | rs5945572 |
| 23andMe | rs5945572 |
| SNPshot | rs5945572 |
| SNPdbe | rs5945572 |
| MSV3d | rs5945572 |
| GWAS Ctlg | rs5945572 |
| GMAF | 0.2382 |
| Max Magnitude | 0 |
| ? | (A;A) (A;G) (G;G) | 28 |
|---|---|---|
|
| ||
Associated with prostate cancer [PMID 18264098
][PMID 18774487]
| GWAS | |
|---|---|
| SNP | rs5945572 |
| PubMedID | [PMID 18264098]
|
| Condition | Prostate cancer |
| Gene | NUDT10, NUDT11, LOC340602, GSPT2, MAGED1 |
| Risk Allele | A |
| pValue | 4.00E-013 |
| OR | 1.23 |
| 95% CI | 1.16-1.30 |
[PMID 19549809] Fine-Mapping and Family-Based Association Analyses of Prostate Cancer Risk Variants at Xp11
[PMID 19902474] Replication of prostate cancer risk loci on 8q24, 11q13, 17q12, 19q33, and Xp11 in African Americans
[PMID 20651075] Prostate Cancer Susceptibility Variants Confer Increased Risk of Disease Progression
[PMID 18708398] Multiple novel prostate cancer predisposition loci confirmed by an international study: the PRACTICAL Consortium.
[PMID 19318432] Generalizability of associations from prostate cancer genome-wide association studies in multiple populations.
[PMID 19336566] Replication of the 10q11 and Xp11 prostate cancer risk variants: results from a Utah pedigree-based study.
[PMID 20690139] Meta-analysis of genome-wide and replication association studies on prostate cancer.
[PMID 21071540] Validation of genome-wide prostate cancer associations in men of African descent.
[PMID 21390317] Characterizing associations and SNP-environment interactions for GWAS-identified prostate cancer risk markers--results from BPC3.
[PMID 23159463] Genetic sequence variants are associated with severity of lower urinary tract symptoms and prostate cancer susceptibility.
