rs7652331
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (C;C) | 0 | normal risk |
| (C;T) | 0 | normal risk |
| (T;T) | 0 | somewhat higher risk for prostate cancer |
| Reference | GRCh38 38.1/141 |
| Chromosome | 3 |
| Position | 45921260 |
| Gene | FYCO1 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs7652331 |
| dbSNP (classic) | rs7652331 |
| ClinGen | rs7652331 |
| ebi | rs7652331 |
| HLI | rs7652331 |
| Exac | rs7652331 |
| Gnomad | rs7652331 |
| Varsome | rs7652331 |
| LitVar | rs7652331 |
| Map | rs7652331 |
| PheGenI | rs7652331 |
| Biobank | rs7652331 |
| 1000 genomes | rs7652331 |
| hgdp | rs7652331 |
| ensembl | rs7652331 |
| geneview | rs7652331 |
| scholar | rs7652331 |
| rs7652331 | |
| pharmgkb | rs7652331 |
| gwascentral | rs7652331 |
| openSNP | rs7652331 |
| 23andMe | rs7652331 |
| SNPshot | rs7652331 |
| SNPdbe | rs7652331 |
| MSV3d | rs7652331 |
| GWAS Ctlg | rs7652331 |
| GMAF | 0.1511 |
| Max Magnitude | 0 |
| ? | (C;C) (C;T) (T;T) | 28 |
|---|---|---|
|
| ||
rs7652331 is one of seven SNPs found in a combined study of over 1,000 patients to be associated with increased risk for prostate cancer. The risk allele for this SNP is (T); and while the odds ratio was not specifically reported, the probability of false significance (not permuted though) was given as p=4.4 x 10e-5, using a dominant model of risk.[PMID 18073375]
| ClinVar | |
|---|---|
| Risk | Rs7652331(C;C) |
| Alt | Rs7652331(C;C) |
| Reference | Rs7652331(T;T) |
| Significance | Non-pathogenic |
| Disease | Congenital cataract |
| Variation | info |
| Gene | FYCO1 |
| CLNDBN | Congenital cataract |
| Reversed | 0 |
| HGVS | NC_000003.11:g.45962752T>C |
| CLNSRC | |
| CLNACC | RCV000355664.1, |
