rs80357701
From SNPedia
Orientation | minus |
Stabilized | minus |
Geno | Mag | Summary |
---|---|---|
(-;AGCA) | 6 | BRCA1 variant considered pathogenic for breast cancer |
(-;CAAG) | 6 | BRCA1 variant considered pathogenic for breast cancer |
(AGCA;AGCA) | 0 | common/normal |
(CAAG;CAAG) | 0 | common in clinvar |
Make rs80357701(-;-) |
Reference | GRCh38 38.1/142 |
Chromosome | 17 |
Position | 43092199 |
Gene | BRCA1 |
is a | snp |
is | mentioned by |
dbSNP | rs80357701 |
dbSNP (classic) | rs80357701 |
ClinGen | rs80357701 |
ebi | rs80357701 |
HLI | rs80357701 |
Exac | rs80357701 |
Gnomad | rs80357701 |
Varsome | rs80357701 |
LitVar | rs80357701 |
Map | rs80357701 |
PheGenI | rs80357701 |
Biobank | rs80357701 |
1000 genomes | rs80357701 |
hgdp | rs80357701 |
ensembl | rs80357701 |
geneview | rs80357701 |
scholar | rs80357701 |
rs80357701 | |
pharmgkb | rs80357701 |
gwascentral | rs80357701 |
openSNP | rs80357701 |
23andMe | rs80357701 |
SNPshot | rs80357701 |
SNPdbe | rs80357701 |
MSV3d | rs80357701 |
GWAS Ctlg | rs80357701 |
Merged from | Rs80357777, Rs80357903 |
Max Magnitude | 6 |
rs80357701, also known as 3448del4, c.3329_3332delAGCA and p.Lys1110_Gln1111?fs, is a variant in the BRCA1 gene considered pathogenic for breast cancer in ClinVar.
This variant is considered a founder mutation in the Columbian Hispanic population.[PMID 30541753]
ClinVar | |
---|---|
Risk | rs80357701(AAGC;AAGC) Rs80357701(CAAG;CAAG) rs80357701(-;-) |
Alt | rs80357701(AAGC;AAGC) Rs80357701(CAAG;CAAG) rs80357701(-;-) |
Reference | Rs80357701(AGCA;AGCA) |
Significance | Pathogenic |
Disease | Breast-ovarian cancer not provided Hereditary cancer-predisposing syndrome Hereditary breast and ovarian cancer syndrome Neoplasm of breast |
Variation | info |
Gene | BRCA1 |
CLNDBN | Breast-ovarian cancer, familial 1 not provided Hereditary cancer-predisposing syndrome Hereditary breast and ovarian cancer syndrome Neoplasm of breast |
Reversed | 1 |
HGVS | NC_000017.10:g.41244214_41244217delCTTG |
CLNSRC | Breast Cancer Information Core (BRCA1) |
CLNACC | RCV000031104.12, RCV000048151.5, RCV000131812.3, RCV000195363.3, RCV000413338.1, |