rs80357701
From SNPedia
| Orientation | minus |
| Stabilized | minus |
| Geno | Mag | Summary |
|---|---|---|
| (-;AGCA) | 6 | BRCA1 variant considered pathogenic for breast cancer |
| (-;CAAG) | 6 | BRCA1 variant considered pathogenic for breast cancer |
| (AGCA;AGCA) | 0 | common/normal |
| (CAAG;CAAG) | 0 | common in clinvar |
| Make rs80357701(-;-) |
| Reference | GRCh38 38.1/142 |
| Chromosome | 17 |
| Position | 43092199 |
| Gene | BRCA1 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs80357701 |
| dbSNP (classic) | rs80357701 |
| ClinGen | rs80357701 |
| ebi | rs80357701 |
| HLI | rs80357701 |
| Exac | rs80357701 |
| Gnomad | rs80357701 |
| Varsome | rs80357701 |
| LitVar | rs80357701 |
| Map | rs80357701 |
| PheGenI | rs80357701 |
| Biobank | rs80357701 |
| 1000 genomes | rs80357701 |
| hgdp | rs80357701 |
| ensembl | rs80357701 |
| geneview | rs80357701 |
| scholar | rs80357701 |
| rs80357701 | |
| pharmgkb | rs80357701 |
| gwascentral | rs80357701 |
| openSNP | rs80357701 |
| 23andMe | rs80357701 |
| SNPshot | rs80357701 |
| SNPdbe | rs80357701 |
| MSV3d | rs80357701 |
| GWAS Ctlg | rs80357701 |
| Merged from | Rs80357777, Rs80357903 |
| Max Magnitude | 6 |
rs80357701, also known as 3448del4, c.3329_3332delAGCA and p.Lys1110_Gln1111?fs, is a variant in the BRCA1 gene considered pathogenic for breast cancer in ClinVar.
This variant is considered a founder mutation in the Columbian Hispanic population.[PMID 30541753
]
| ClinVar | |
|---|---|
| Risk | rs80357701(AAGC;AAGC) Rs80357701(CAAG;CAAG) rs80357701(-;-) |
| Alt | rs80357701(AAGC;AAGC) Rs80357701(CAAG;CAAG) rs80357701(-;-) |
| Reference | Rs80357701(AGCA;AGCA) |
| Significance | Pathogenic |
| Disease | Breast-ovarian cancer not provided Hereditary cancer-predisposing syndrome Hereditary breast and ovarian cancer syndrome Neoplasm of breast |
| Variation | info |
| Gene | BRCA1 |
| CLNDBN | Breast-ovarian cancer, familial 1 not provided Hereditary cancer-predisposing syndrome Hereditary breast and ovarian cancer syndrome Neoplasm of breast |
| Reversed | 1 |
| HGVS | NC_000017.10:g.41244214_41244217delCTTG |
| CLNSRC | Breast Cancer Information Core (BRCA1) |
| CLNACC | RCV000031104.12, RCV000048151.5, RCV000131812.3, RCV000195363.3, RCV000413338.1, |
