rs9550642
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (A;A) | 2.2x risk | |
| (A;G) | 1.3x risk | |
| (G;G) | 0 | normal |
| Reference | GRCh38 38.1/141 |
| Chromosome | 13 |
| Position | 20375953 |
| Gene | LOC100133618 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs9550642 |
| dbSNP (classic) | rs9550642 |
| ClinGen | rs9550642 |
| ebi | rs9550642 |
| HLI | rs9550642 |
| Exac | rs9550642 |
| Gnomad | rs9550642 |
| Varsome | rs9550642 |
| LitVar | rs9550642 |
| Map | rs9550642 |
| PheGenI | rs9550642 |
| Biobank | rs9550642 |
| 1000 genomes | rs9550642 |
| hgdp | rs9550642 |
| ensembl | rs9550642 |
| geneview | rs9550642 |
| scholar | rs9550642 |
| rs9550642 | |
| pharmgkb | rs9550642 |
| gwascentral | rs9550642 |
| openSNP | rs9550642 |
| 23andMe | rs9550642 |
| SNPshot | rs9550642 |
| SNPdbe | rs9550642 |
| MSV3d | rs9550642 |
| GWAS Ctlg | rs9550642 |
| GMAF | 0.1368 |
| Max Magnitude | 0 |
| ? | (A;A) (A;G) (G;G) | 28 |
|---|---|---|
|
| ||
rs9550642 has been reported in a large study to be associated with rheumatoid arthritis.
The risk allele (oriented to the dbSNP entry) is (A); the odds ratio associated with heterozygotes is 1.34 (CI 1.15-1.56), and for homozygotes, 2.23 (CI 1.21-4.13). [PMID 17554300
]
[PMID 18794857] Rheumatoid arthritis susceptibility loci at chromosomes 10p15, 12q13 and 22q13.
[PMID 20017963] Representation of genetic association via attributable familial relative risks in order to identify polymorphisms functionally relevant to rheumatoid arthritis.
