Difference between revisions of "Rs3093662"
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{{Rsnum | {{Rsnum | ||
|rsid=3093662 | |rsid=3093662 | ||
| + | |Gene=TNF | ||
| + | |Chromosome=6 | ||
| + | |position=31576412 | ||
| + | |Orientation=plus | ||
| + | |GMAF=0.07346 | ||
| + | |Assembly=GRCh38 | ||
| + | |GenomeBuild=38.1 | ||
| + | |dbSNPBuild=141 | ||
| + | |geno1=(A;A) | ||
| + | |geno2=(A;G) | ||
| + | |geno3=(G;G) | ||
| + | |Gene_s=TNF | ||
| + | |StabilizedOrientation=plus | ||
| + | }}{{ population diversity | ||
| + | | geno1=(A;A) | ||
| + | | geno2=(A;G) | ||
| + | | geno3=(G;G) | ||
| + | | CEU | 85.0 | 15.0 | 0.0 | ||
| + | | HCB | 93.4 | 5.9 | 0.7 | ||
| + | | JPT | 96.5 | 3.5 | 0.0 | ||
| + | | YRI | 87.8 | 10.9 | 1.4 | ||
| + | | ASW | 78.9 | 21.1 | 0.0 | ||
| + | | CHB | 93.4 | 5.9 | 0.7 | ||
| + | | CHD | 96.3 | 3.7 | 0.0 | ||
| + | | GIH | 68.3 | 30.7 | 1.0 | ||
| + | | LWK | 80.0 | 20.0 | 0.0 | ||
| + | | MEX | 75.9 | 22.4 | 1.7 | ||
| + | | MKK | 63.5 | 35.3 | 1.3 | ||
| + | | TSI | 80.2 | 18.8 | 1.0 | ||
| + | | HapMapRevision=28 | ||
| + | }}{{PMID Auto | ||
| + | |PMID=20459604 | ||
| + | |Title=Large-scale association analysis of TNF/LTA gene region polymorphisms in type 2 diabetes | ||
| + | |OA=1 | ||
| + | }} | ||
| + | |||
| + | {{PMID Auto | ||
| + | |PMID=21463712 | ||
| + | |Title=Differential serum cytokine levels are associated with cytokine gene polymorphisms in North Indians with active pulmonary tuberculosis | ||
}} | }} | ||
| + | |||
| + | {{PMID|18620570|OA=1 | ||
| + | }} The TNFalpha gene relates to clinical phenotype in alpha-1-antitrypsin deficiency. | ||
| + | |||
| + | {{PMID|18640487|OA=1 | ||
| + | }} Association of donor inflammation- and apoptosis-related genotypes and delayed allograft function after kidney transplantation. | ||
| + | |||
| + | {{PMID|18805939|OA=1 | ||
| + | }} Functional genetic polymorphisms and female reproductive disorders: part II--endometriosis. | ||
| + | |||
| + | {{PMID|19107206|OA=1 | ||
| + | }} Distinct genetic loci control plasma HIV-RNA and cellular HIV-DNA levels in HIV-1 infection: the ANRS Genome Wide Association 01 study. | ||
| + | |||
| + | {{PMID|19167443|OA=1 | ||
| + | }} Family-based analysis of tumor necrosis factor and lymphotoxin-alpha tag polymorphisms with type 1 diabetes in the population of South Croatia. | ||
| + | |||
| + | {{PMID|19281305|OA=1 | ||
| + | }} Tumor necrosis factor and lymphotoxin-alpha polymorphisms and severe malaria in African populations. | ||
| + | |||
| + | {{PMID|19409079|OA=1 | ||
| + | }} Association of MICA with rheumatoid arthritis independent of known HLA-DRB1 risk alleles in a family-based and a case control study. | ||
| + | |||
| + | {{PMID|19505919|OA=1 | ||
| + | }} Toll-like receptor signaling pathway variants and prostate cancer mortality. | ||
| + | |||
| + | {{PMID|20018062|OA=1 | ||
| + | }} Identification of genes and haplotypes that predict rheumatoid arthritis using random forests. | ||
| + | |||
| + | {{PMID|20617178|OA=1 | ||
| + | }} Leprosy and the adaptation of human toll-like receptor 1. | ||
| + | |||
| + | {{PMID|21320344|OA=1 | ||
| + | }} Evaluation of genetic susceptibility to childhood allergy and asthma in an African American urban population. | ||
| + | |||
{{PMID Auto | {{PMID Auto | ||
| − | |PMID= | + | |PMID=29763737 |
| − | |Title= | + | |Title=Validation of inflammatory genetic variants associated with long-term cancer related fatigue in a large breast cancer cohort. |
}} | }} | ||
| + | {{on chip | 23andMe v1}} | ||
| + | {{on chip | 23andMe v2}} | ||
| + | {{on chip | 23andMe v3}} | ||
| + | {{on chip | 23andMe v4}} | ||
| + | {{on chip | 23andMe v5}} | ||
| + | {{on chip | Ancestry v2c}} | ||
| + | {{on chip | Ancestry v2}} | ||
| + | {{on chip | FTDNA2}} | ||
{{on chip | HumanOmni1Quad}} | {{on chip | HumanOmni1Quad}} | ||
{{on chip | Illumina Human 1M}} | {{on chip | Illumina Human 1M}} | ||
| + | {{on chip | Ancestry v2d}} | ||
Latest revision as of 21:50, 6 December 2019
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (A;A) | 0 | common in complete genomics |
| Make rs3093662(A;G) |
| Make rs3093662(G;G) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 6 |
| Position | 31576412 |
| Gene | TNF |
| is a | snp |
| is | mentioned by |
| dbSNP | rs3093662 |
| dbSNP (classic) | rs3093662 |
| ClinGen | rs3093662 |
| ebi | rs3093662 |
| HLI | rs3093662 |
| Exac | rs3093662 |
| Gnomad | rs3093662 |
| Varsome | rs3093662 |
| LitVar | rs3093662 |
| Map | rs3093662 |
| PheGenI | rs3093662 |
| Biobank | rs3093662 |
| 1000 genomes | rs3093662 |
| hgdp | rs3093662 |
| ensembl | rs3093662 |
| geneview | rs3093662 |
| scholar | rs3093662 |
| rs3093662 | |
| pharmgkb | rs3093662 |
| gwascentral | rs3093662 |
| openSNP | rs3093662 |
| 23andMe | rs3093662 |
| SNPshot | rs3093662 |
| SNPdbe | rs3093662 |
| MSV3d | rs3093662 |
| GWAS Ctlg | rs3093662 |
| GMAF | 0.07346 |
| Max Magnitude | 0 |
| ? | (A;A) (A;G) (G;G) | 28 |
|---|---|---|
|
| ||
[PMID 20459604
] Large-scale association analysis of TNF/LTA gene region polymorphisms in type 2 diabetes
[PMID 21463712] Differential serum cytokine levels are associated with cytokine gene polymorphisms in North Indians with active pulmonary tuberculosis
[PMID 18620570] The TNFalpha gene relates to clinical phenotype in alpha-1-antitrypsin deficiency.
[PMID 18640487] Association of donor inflammation- and apoptosis-related genotypes and delayed allograft function after kidney transplantation.
[PMID 18805939] Functional genetic polymorphisms and female reproductive disorders: part II--endometriosis.
[PMID 19107206] Distinct genetic loci control plasma HIV-RNA and cellular HIV-DNA levels in HIV-1 infection: the ANRS Genome Wide Association 01 study.
[PMID 19167443] Family-based analysis of tumor necrosis factor and lymphotoxin-alpha tag polymorphisms with type 1 diabetes in the population of South Croatia.
[PMID 19281305] Tumor necrosis factor and lymphotoxin-alpha polymorphisms and severe malaria in African populations.
[PMID 19409079] Association of MICA with rheumatoid arthritis independent of known HLA-DRB1 risk alleles in a family-based and a case control study.
[PMID 19505919] Toll-like receptor signaling pathway variants and prostate cancer mortality.
[PMID 20018062] Identification of genes and haplotypes that predict rheumatoid arthritis using random forests.
[PMID 20617178] Leprosy and the adaptation of human toll-like receptor 1.
[PMID 21320344] Evaluation of genetic susceptibility to childhood allergy and asthma in an African American urban population.
[PMID 29763737] Validation of inflammatory genetic variants associated with long-term cancer related fatigue in a large breast cancer cohort.
