Difference between revisions of "Rs3093662"
SNPediaBot (talk | contribs) m (Set on chip) |
SNPediaBot (talk | contribs) m (added Open Access info) |
||
| Line 33: | Line 33: | ||
|PMID=20459604 | |PMID=20459604 | ||
|Title=Large-scale association analysis of TNF/LTA gene region polymorphisms in type 2 diabetes | |Title=Large-scale association analysis of TNF/LTA gene region polymorphisms in type 2 diabetes | ||
| + | |OA=1 | ||
}} | }} | ||
| Line 40: | Line 41: | ||
}} | }} | ||
| − | {{PMID|18620570}} The TNFalpha gene relates to clinical phenotype in alpha-1-antitrypsin deficiency. | + | {{PMID|18620570|OA=1 |
| + | }} The TNFalpha gene relates to clinical phenotype in alpha-1-antitrypsin deficiency. | ||
| − | {{PMID|18640487}} Association of donor inflammation- and apoptosis-related genotypes and delayed allograft function after kidney transplantation. | + | {{PMID|18640487|OA=1 |
| + | }} Association of donor inflammation- and apoptosis-related genotypes and delayed allograft function after kidney transplantation. | ||
| − | {{PMID|18805939}} Functional genetic polymorphisms and female reproductive disorders: part II--endometriosis. | + | {{PMID|18805939|OA=1 |
| + | }} Functional genetic polymorphisms and female reproductive disorders: part II--endometriosis. | ||
| − | {{PMID|19107206}} Distinct genetic loci control plasma HIV-RNA and cellular HIV-DNA levels in HIV-1 infection: the ANRS Genome Wide Association 01 study. | + | {{PMID|19107206|OA=1 |
| + | }} Distinct genetic loci control plasma HIV-RNA and cellular HIV-DNA levels in HIV-1 infection: the ANRS Genome Wide Association 01 study. | ||
| − | {{PMID|19167443}} Family-based analysis of tumor necrosis factor and lymphotoxin-alpha tag polymorphisms with type 1 diabetes in the population of South Croatia. | + | {{PMID|19167443|OA=1 |
| + | }} Family-based analysis of tumor necrosis factor and lymphotoxin-alpha tag polymorphisms with type 1 diabetes in the population of South Croatia. | ||
| − | {{PMID|19281305}} Tumor necrosis factor and lymphotoxin-alpha polymorphisms and severe malaria in African populations. | + | {{PMID|19281305|OA=1 |
| + | }} Tumor necrosis factor and lymphotoxin-alpha polymorphisms and severe malaria in African populations. | ||
| − | {{PMID|19409079}} Association of MICA with rheumatoid arthritis independent of known HLA-DRB1 risk alleles in a family-based and a case control study. | + | {{PMID|19409079|OA=1 |
| + | }} Association of MICA with rheumatoid arthritis independent of known HLA-DRB1 risk alleles in a family-based and a case control study. | ||
| − | {{PMID|19505919}} Toll-like receptor signaling pathway variants and prostate cancer mortality. | + | {{PMID|19505919|OA=1 |
| + | }} Toll-like receptor signaling pathway variants and prostate cancer mortality. | ||
| − | {{PMID|20018062}} Identification of genes and haplotypes that predict rheumatoid arthritis using random forests. | + | {{PMID|20018062|OA=1 |
| + | }} Identification of genes and haplotypes that predict rheumatoid arthritis using random forests. | ||
| − | {{PMID|20617178}} Leprosy and the adaptation of human toll-like receptor 1. | + | {{PMID|20617178|OA=1 |
| + | }} Leprosy and the adaptation of human toll-like receptor 1. | ||
| − | {{PMID|21320344}} Evaluation of genetic susceptibility to childhood allergy and asthma in an African American urban population. | + | {{PMID|21320344|OA=1 |
| + | }} Evaluation of genetic susceptibility to childhood allergy and asthma in an African American urban population. | ||
{{on chip | 23andMe v1}} | {{on chip | 23andMe v1}} | ||
Revision as of 05:27, 7 January 2014
| Orientation | plus |
| Geno | Mag | Summary |
|---|---|---|
| (A;A) | 0 | common in complete genomics |
| Make rs3093662(A;G) |
| Make rs3093662(G;G) |
| Reference | GRCh37 37.1/131 |
| Chromosome | 6 |
| Position | 31544189 |
| Gene | TNF |
| is a | snp |
| is | mentioned by |
| dbSNP | rs3093662 |
| dbSNP (classic) | rs3093662 |
| ClinGen | rs3093662 |
| ebi | rs3093662 |
| HLI | rs3093662 |
| Exac | rs3093662 |
| Gnomad | rs3093662 |
| Varsome | rs3093662 |
| LitVar | rs3093662 |
| Map | rs3093662 |
| PheGenI | rs3093662 |
| Biobank | rs3093662 |
| 1000 genomes | rs3093662 |
| hgdp | rs3093662 |
| ensembl | rs3093662 |
| geneview | rs3093662 |
| scholar | rs3093662 |
| rs3093662 | |
| pharmgkb | rs3093662 |
| gwascentral | rs3093662 |
| openSNP | rs3093662 |
| 23andMe | rs3093662 |
| SNPshot | rs3093662 |
| SNPdbe | rs3093662 |
| MSV3d | rs3093662 |
| GWAS Ctlg | rs3093662 |
| GMAF | 0.0742 |
| Max Magnitude | 0 |
| ? | (A;A) (A;G) (G;G) | 28 |
|---|---|---|
|
| ||
[PMID 20459604
] Large-scale association analysis of TNF/LTA gene region polymorphisms in type 2 diabetes
[PMID 21463712] Differential serum cytokine levels are associated with cytokine gene polymorphisms in North Indians with active pulmonary tuberculosis
[PMID 18620570] The TNFalpha gene relates to clinical phenotype in alpha-1-antitrypsin deficiency.
[PMID 18640487] Association of donor inflammation- and apoptosis-related genotypes and delayed allograft function after kidney transplantation.
[PMID 18805939] Functional genetic polymorphisms and female reproductive disorders: part II--endometriosis.
[PMID 19107206] Distinct genetic loci control plasma HIV-RNA and cellular HIV-DNA levels in HIV-1 infection: the ANRS Genome Wide Association 01 study.
[PMID 19167443] Family-based analysis of tumor necrosis factor and lymphotoxin-alpha tag polymorphisms with type 1 diabetes in the population of South Croatia.
[PMID 19281305] Tumor necrosis factor and lymphotoxin-alpha polymorphisms and severe malaria in African populations.
[PMID 19409079] Association of MICA with rheumatoid arthritis independent of known HLA-DRB1 risk alleles in a family-based and a case control study.
[PMID 19505919] Toll-like receptor signaling pathway variants and prostate cancer mortality.
[PMID 20018062] Identification of genes and haplotypes that predict rheumatoid arthritis using random forests.
[PMID 20617178] Leprosy and the adaptation of human toll-like receptor 1.
[PMID 21320344] Evaluation of genetic susceptibility to childhood allergy and asthma in an African American urban population.
