rs1613662
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (A;A) | 0 | common in complete genomics |
| (G;G) | 0 | common in clinvar |
| Make rs1613662(A;G) |
| Reference | GRCh37 37.1/132 |
| Chromosome | 19 |
| Position | 55025227 |
| Gene | GP6, LOC107985325 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs1613662 |
| dbSNP (classic) | rs1613662 |
| ClinGen | rs1613662 |
| ebi | rs1613662 |
| HLI | rs1613662 |
| Exac | rs1613662 |
| Gnomad | rs1613662 |
| Varsome | rs1613662 |
| LitVar | rs1613662 |
| Map | rs1613662 |
| PheGenI | rs1613662 |
| Biobank | rs1613662 |
| 1000 genomes | rs1613662 |
| hgdp | rs1613662 |
| ensembl | rs1613662 |
| geneview | rs1613662 |
| scholar | rs1613662 |
| rs1613662 | |
| pharmgkb | rs1613662 |
| gwascentral | rs1613662 |
| openSNP | rs1613662 |
| 23andMe | rs1613662 |
| SNPshot | rs1613662 |
| SNPdbe | rs1613662 |
| MSV3d | rs1613662 |
| GWAS Ctlg | rs1613662 |
| GMAF | 0.1309 |
| Max Magnitude | 0 |
| ? | (A;A) (A;G) (G;G) | 28 |
|---|---|---|
|
| ||
Gene variants associated with deep vein thrombosis.[PMID 18349091]
Updated analysis of gene variants associated with deep vein thrombosis.[PMID 20124536]
per risk allele odds ratio
- rs13146272 in CYP4V2 (risk allele frequency, 0.64) OR 1.24 (95% CI, 1.11-1.37) for rs13146272
- rs2227589 in SERPINC1 (risk allele frequency, 0.10) OR 1.29 (95% CI, 1.10-1.49) for rs2227589
- rs1613662 in GP6 (risk allele frequency, 0.84) OR 1.15 (95% CI, 1.01-1.30) for rs1613662
A study of 453 VTE cases and 1,327 controls was able to replicate the "mild effects" of this SNP on risk for VTE, however they felt that stronger associations were found between increased VTE risk and either the Factor V Leiden mutation (rs6025)or having blood types O or A2.[PMID 19278955]
[PMID 19786296] Platelet glycoprotein GP VI 13254C allele is an independent risk factor of premature myocardial infarction
[PMID 22133274
] Polymorphisms of PAI-1 and platelet GP Ia may associate with impairment of renal function and thrombocytopenia in Puumala hantavirus infection
[PMID 20031567] An evaluation of candidate genes of inflammation and thrombosis in relation to the risk of venous thromboembolism: The Women's Genome Health Study.
[PMID 21232005] New gene variants associated with venous thrombosis: a replication study in White and Black Americans.
[PMID 21854539] Genetic determinants of platelet reactivity during acetylsalicylic acid therapy in diabetic patients: evaluation of 27 polymorphisms within candidate genes.
[PMID 23150947] Single nucleotide polymorphisms and the risk of venous thrombosis: results from a Danish case-cohort study
[PMID 23168074] The prevalence of the platelet glycoprotein VI polymorphisms in patients with sticky platelet syndrome and ischemic stroke
[PMID 23739280] Association study of the platelet collagen receptor glycoprotein VI gene with rheumatoid arthritis
[PMID 22821001] Variability of GP6 gene in patients with sticky platelet syndrome and deep venous thrombosis and/or pulmonary embolism.
[PMID 22901851] Platelet aggregation abnormalities in patients with fetal losses: the GP6 gene polymorphism.
[PMID 25091233] Association of F11 polymorphism rs2289252 with deep vein thrombosis and related phenotypes in population of Latvia
[PMID 25901734] Effect of platelet receptor gene polymorphisms on outcomes in ST-elevation myocardial infarction patients after percutaneous coronary intervention
| ClinVar | |
|---|---|
| Risk | Rs1613662(A;A) |
| Alt | Rs1613662(A;A) |
| Reference | Rs1613662(G;G) |
| Significance | Non-pathogenic |
| Disease | not specified |
| Variation | info |
| Gene | GP6 |
| CLNDBN | not specified |
| Reversed | 0 |
| HGVS | NC_000019.9:g.55536595G>A |
| CLNSRC | |
| CLNACC | RCV000241611.1, |
