rs1736557
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (A;A) | 1.1 | normal? |
| (A;G) | 0 | unlikely to be associated with trimethylaminuria unless as a carrier (if that) |
| (G;G) | 0 | common in clinvar |
| Reference | GRCh38 38.1/141 |
| Chromosome | 1 |
| Position | 171110939 |
| Gene | FMO3 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs1736557 |
| dbSNP (classic) | rs1736557 |
| ClinGen | rs1736557 |
| ebi | rs1736557 |
| HLI | rs1736557 |
| Exac | rs1736557 |
| Gnomad | rs1736557 |
| Varsome | rs1736557 |
| LitVar | rs1736557 |
| Map | rs1736557 |
| PheGenI | rs1736557 |
| Biobank | rs1736557 |
| 1000 genomes | rs1736557 |
| hgdp | rs1736557 |
| ensembl | rs1736557 |
| geneview | rs1736557 |
| scholar | rs1736557 |
| rs1736557 | |
| pharmgkb | rs1736557 |
| gwascentral | rs1736557 |
| openSNP | rs1736557 |
| 23andMe | rs1736557 |
| SNPshot | rs1736557 |
| SNPdbe | rs1736557 |
| MSV3d | rs1736557 |
| GWAS Ctlg | rs1736557 |
| Merged from | Rs17858963 |
| GMAF | 0.09412 |
| Max Magnitude | 1.1 |
rs1736557, also known as Val257Met, is a SNP in the FMO3 gene. It has been linked to trimethylaminuria; see variant .0002, OMIM 136132.
| ? | (A;A) (A;G) (G;G) | 28 |
|---|---|---|
|
| ||
| ClinVar | |
|---|---|
| Risk | Rs1736557(A;A) |
| Alt | Rs1736557(A;A) |
| Reference | Rs1736557(G;G) |
| Significance | Other |
| Disease | Trimethylaminuria not specified |
| Variation | info |
| Gene | FMO3 |
| CLNDBN | Trimethylaminuria not specified |
| Reversed | 0 |
| HGVS | NC_000001.10:g.171080080G>A |
| CLNSRC | OMIM Allelic Variant UniProtKB (protein) |
| CLNACC | RCV000017698.29, RCV000253910.1, |
[PMID 15858076] Discovery of novel flavin-containing monooxygenase 3 (FMO3) single nucleotide polymorphisms and functional analysis of upstream haplotype variants.
[PMID 24165757] The association of cytochrome P450 genetic polymorphisms with sulfolane formation and the efficacy of a busulfan-based conditioning regimen in pediatric patients undergoing hematopoietic stem cell transplantation
Categories:
- Is a snp
- In dbSNP
- SNPs on chromosome 1
- Has genotype
- Has population
- Uses omim
- On chip 23andMe v1
- On chip 23andMe v2
- On chip 23andMe v3
- On chip 23andMe v4
- On chip Affy GenomeWide 6
- On chip Ancestry v2
- On chip FTDNA2
- On chip FTDNA
- On chip HumanOmni1Quad
- On chip Illumina Human 1M
- On chip 23andMe v5
- On chip Ancestry v2c
- On chip Ancestry v2d
