rs1799964
| Orientation | plus |
| Stabilized | plus |
| Make rs1799964(C;C) |
| Make rs1799964(C;T) |
| Make rs1799964(T;T) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 6 |
| Position | 31574531 |
| Gene | LOC100287329, LTA, TNF |
| is a | snp |
| is | mentioned by |
| dbSNP | rs1799964 |
| dbSNP (classic) | rs1799964 |
| ClinGen | rs1799964 |
| ebi | rs1799964 |
| HLI | rs1799964 |
| Exac | rs1799964 |
| Gnomad | rs1799964 |
| Varsome | rs1799964 |
| LitVar | rs1799964 |
| Map | rs1799964 |
| PheGenI | rs1799964 |
| Biobank | rs1799964 |
| 1000 genomes | rs1799964 |
| hgdp | rs1799964 |
| ensembl | rs1799964 |
| geneview | rs1799964 |
| scholar | rs1799964 |
| rs1799964 | |
| pharmgkb | rs1799964 |
| gwascentral | rs1799964 |
| openSNP | rs1799964 |
| 23andMe | rs1799964 |
| SNPshot | rs1799964 |
| SNPdbe | rs1799964 |
| MSV3d | rs1799964 |
| GWAS Ctlg | rs1799964 |
| GMAF | 0.2002 |
| Max Magnitude | 0 |
| ? | (C;C) (C;T) (T;T) | 28 |
|---|---|---|
|
| ||
Associated with at least one "mortality outcome" in a study of ~10,000 individuals.[PMID 18263601]
Separately, a meta-analysis of 10 case-control studies, including over 2,200 Graves' disease cases, concluded that rs1799964(C) carriers were associated with the disease.[PMID 18472000]
[PMID 19818126
] Single nucleotide polymorphisms in obesity-related genes and all-cause and cause-specific mortality: a prospective cohort study
[PMID 20887379] Tumour necrosis factor haplotypes associated with sensory neuropathy in Asian and Caucasian human immunodeficiency virus patients
[PMID 21995493] TNFRSF1B +676 T>G polymorphism predicts survival of non-Small cell lung cancer patients treated with chemoradiotherapy
[PMID 22666399] Tumor Necrosis Factor-α Induced Protein 8 Polymorphism and Risk of Non-Hodgkin's Lymphoma in a Chinese Population: A Case-Control Study
[PMID 12509789] Identification of I kappa BL as the second major histocompatibility complex-linked susceptibility locus for rheumatoid arthritis.
[PMID 17216494] Genetic variation in tumor necrosis factor and lymphotoxin-alpha (TNF-LTA) and breast cancer risk.
[PMID 17493155] Significant association between TNF-alpha (TNF) promoter allele (-1031C, -863C, and -857C) and cerebral malaria in Thailand.
[PMID 18194515] Polymorphisms of TNF-enhancer and gene for FcgammaRIIa correlate with the severity of falciparum malaria in the ethnically diverse Indian population.
[PMID 18196539] TNF polymorphisms and prostate cancer risk.
[PMID 18620570] The TNFalpha gene relates to clinical phenotype in alpha-1-antitrypsin deficiency.
[PMID 18635873] TNF promoter polymorphisms associated with muscle phenotypes in humans.
[PMID 18676870] Variants in inflammation genes and the risk of biliary tract cancers and stones: a population-based study in China.
[PMID 18709160] Interactions between glutathione S-transferase P1, tumor necrosis factor, and traffic-related air pollution for development of childhood allergic disease.
[PMID 18715339] Associations between cytokine/cytokine receptor single nucleotide polymorphisms and humoral immunity to measles, mumps and rubella in a Somali population.
[PMID 18805939] Functional genetic polymorphisms and female reproductive disorders: part II--endometriosis.
[PMID 18811622] Association of TNF-alpha with severe respiratory syncytial virus infection and bronchial asthma.
[PMID 19167443] Family-based analysis of tumor necrosis factor and lymphotoxin-alpha tag polymorphisms with type 1 diabetes in the population of South Croatia.
[PMID 19281305] Tumor necrosis factor and lymphotoxin-alpha polymorphisms and severe malaria in African populations.
[PMID 19356949] Cytokine SNPs: Comparison of allele frequencies by race and implications for future studies.
[PMID 19409079] Association of MICA with rheumatoid arthritis independent of known HLA-DRB1 risk alleles in a family-based and a case control study.
[PMID 19615068] The role of TNF genetic variants and the interaction with cigarette smoking for gastric cancer risk: a nested case-control study.
[PMID 19661089] Genetic variation in immune regulation and DNA repair pathways and stomach cancer in China.
[PMID 19673019] IL-10 and TNF-alpha promoter haplotypes are associated with childhood Crohn's disease location.
[PMID 20007930] A functional haplotype in the 3'untranslated region of TNFRSF1B is associated with tuberculosis in two African populations.
[PMID 20112337] Single nucleotide polymorphisms of 8 inflammation-related genes and their associations with smoking-related cancers.
[PMID 20459604] Large-scale association analysis of TNF/LTA gene region polymorphisms in type 2 diabetes.
[PMID 20463618] Role of polymorphic variants as genetic modulators of infection in neonatal sepsis.
[PMID 20668555] Extended LTA, TNF, LST1 and HLA gene haplotypes and their association with rubella vaccine-induced immunity.
[PMID 20811626] Genetic variants in inflammation-related genes are associated with radiation-induced toxicity following treatment for non-small cell lung cancer.
[PMID 23472126] The Association between Polymorphisms in the MRPL4 and TNF-α Genes and Susceptibility to Allergic Rhinitis
| GWAS snp | |
|---|---|
| PMID | [PMID 21102463]
|
| Trait | Crohn's disease |
| Title | Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci. |
| Risk Allele | C |
| P-val | 4E-11 |
| Odds Ratio | 1.19 [1.13-1.25] |
[PMID 23840460] Lymphotoxin Alpha (LTA) Polymorphism Is Associated with Prognosis of Non-Hodgkin's Lymphoma in a Chinese Population
[PMID 23870134] Association of tumor necrosis factor-alpha promoter variants with risk of HPV-associated oral squamous cell carcinoma
[PMID 24003533] Relationship between cytokine single nucleotide polymorphisms and sarcoidosis among Japanese subjects
[PMID 24151497] Association Analysis of IL10, TNF-α, and IL23R-IL12RB2 SNPs with Behçet's Disease Risk in Western Algeria
[PMID 23380141] Association of HLA-DRB1 and TNF genotypes with dengue hemorrhagic fever
[PMID 24405540] [Association of TNF-1031T/C and clinical efficacy of insulin therapy in newly diagnosed type 2 diabetics]
[PMID 22464751] SNPs in PTGS2 and LTA predict pain and quality of life in long term lung cancer survivors.
[PMID 22711844] SNPs in the TNF-alpha gene promoter associated with Behcet's disease in Moroccan patients.
[PMID 22808100] Functional differences exist between TNFalpha promoters encoding the common -237G SNP and the rarer HLA-B*5701-linked A variant.
[PMID 23071570] Gene-gene interaction and functional impact of polymorphisms on innate immune genes in controlling Plasmodium falciparum blood infection level.
[PMID 23777929] Searching for an immunogenetic factor that will illuminate susceptibility to non-tuberculous mycobacterial disease.
[PMID 24935328] Functional tumor necrosis factor alpha polymorphisms and haplotype analysis in high-risk corneal transplantation
[PMID 25054016] Association of NQO1 and TNF polymorphisms with Parkinson's disease: A meta-analysis of 15 genetic association studies
[PMID 25246119] Family association study between tumour necrosis factor a gene polymorphisms and polycystic ovary syndrome in Han Chinese
[PMID 25636570] Association of TNF -1031 C/C as a potential protection marker for leprosy development in Amazonas state patients, Brazil
[PMID 24726621] Cytokine gene variations associated with subsyndromal depressive symptoms in patients with breast cancer
[PMID 25809685] Common Variants and Haplotypes in the TF, TNF-α, and TMPRSS6 Genes Are Associated with Iron Status in a Female Black South African Population
[PMID 24896147] Role of TNF block genetic variants in HIV-associated sensory neuropathy in black Southern Africans
[PMID 26550110] The role of gene variants of the inflammatory markers CRP and TNF-α in cardiovascular heart disease: systematic review and meta-analysis
[PMID 27477483] TNFA gene variants related to the inflammatory status and its association with cellular aging: From the CORDIOPREV study.
[PMID 28633686] Polymorphisms of the TNF-α gene interact with plasma fatty acids on inflammatory biomarker profile: a population-based, cross-sectional study in São Paulo, Brazil.
[PMID 29027627] Association of TNF-α-3959T/C Gene Polymorphisms in the Chinese Population with Intracranial Aneurysms.
[PMID 29118938] Association between TNF-α rs1799964 and RAF1 rs1051208 MicroRNA binding site SNP and gastric cancer susceptibility in an Iranian population.
[PMID 31896166] Risk factors for histological progression of nonalcoholic steatohepatitis analyzed from repeated biopsy cases.
[PMID 32655394] Polymorphisms Involved in Platelet Activation and Inflammatory Response on Aspirin-Related Upper Gastrointestinal Bleeding: A Case-Control Study.
