rs2779562
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Make rs2779562(C;C) |
| Make rs2779562(C;T) |
| Make rs2779562(T;T) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 9 |
| Position | 98515399 |
| Gene | GABBR2 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs2779562 |
| dbSNP (classic) | rs2779562 |
| ClinGen | rs2779562 |
| ebi | rs2779562 |
| HLI | rs2779562 |
| Exac | rs2779562 |
| Gnomad | rs2779562 |
| Varsome | rs2779562 |
| LitVar | rs2779562 |
| Map | rs2779562 |
| PheGenI | rs2779562 |
| Biobank | rs2779562 |
| 1000 genomes | rs2779562 |
| hgdp | rs2779562 |
| ensembl | rs2779562 |
| geneview | rs2779562 |
| scholar | rs2779562 |
| rs2779562 | |
| pharmgkb | rs2779562 |
| gwascentral | rs2779562 |
| openSNP | rs2779562 |
| 23andMe | rs2779562 |
| SNPshot | rs2779562 |
| SNPdbe | rs2779562 |
| MSV3d | rs2779562 |
| GWAS Ctlg | rs2779562 |
| GMAF | 0.4421 |
| Max Magnitude | 0 |
| ? | (C;C) (C;T) (T;T) | 28 |
|---|---|---|
|
| ||
[PMID 15759211
] Associated with nicotine Dependence as part of several haplotypes, based on a study of 1,000+ subjects including both African-Americans and European-Americans.
The risk haplotype varies between populations. Among African-Americans, the haplotype C-C-G of rs2491397-rs2184026-rs3750344 had a significant positive association with nicotine dependence. Among European-Americans, for rs1435252-rs3780422-rs2779562-rs3750344, the C-A-C-A haplotype was positively associated with nicotine dependence while the T-A-T-A haplotype was negatively associated.[PMID 15759211]
[PMID 22309839] Association study of 45 candidate genes in nicotine dependence in Han Chinese
