rs7931342
| Orientation | plus |
| Stabilized | plus |
| Make rs7931342(G;G) |
| Make rs7931342(G;T) |
| Make rs7931342(T;T) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 11 |
| Position | 69227030 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs7931342 |
| dbSNP (classic) | rs7931342 |
| ClinGen | rs7931342 |
| ebi | rs7931342 |
| HLI | rs7931342 |
| Exac | rs7931342 |
| Gnomad | rs7931342 |
| Varsome | rs7931342 |
| LitVar | rs7931342 |
| Map | rs7931342 |
| PheGenI | rs7931342 |
| Biobank | rs7931342 |
| 1000 genomes | rs7931342 |
| hgdp | rs7931342 |
| ensembl | rs7931342 |
| geneview | rs7931342 |
| scholar | rs7931342 |
| rs7931342 | |
| pharmgkb | rs7931342 |
| gwascentral | rs7931342 |
| openSNP | rs7931342 |
| 23andMe | rs7931342 |
| SNPshot | rs7931342 |
| SNPdbe | rs7931342 |
| MSV3d | rs7931342 |
| GWAS Ctlg | rs7931342 |
| GMAF | 0.4885 |
| Max Magnitude | 0 |
| ? | (G;G) (G;T) (T;T) | 28 |
|---|---|---|
|
| ||
cancer-genetics these snps influence genetic risk for prostate cancer
- the haplotype rs6983267 rs1016343 rs4242384
- rs7501939
- rs1859962
- rs2660753
- rs9364554
- rs6465657
- rs10993994
- rs7931342
- rs2735839
- rs5945619
- rs10993994
[PMID 18974127
] rs7931342 showed some evidence of association with breast cancer (per minor allele OR, 0.95; 95% CI, 0.91-0.99; P(trend) = 0.028)
| GWAS | |
|---|---|
| SNP | rs7931342 |
| PubMedID | [PMID 18264097] |
| Condition | Prostate cancer |
| Gene | Intergenic |
| Risk Allele | G |
| pValue | 2.00E-012 |
| OR | 1.19 |
| 95% CI | 1.11-1.27 |
[PMID 19336566] Replication of the 10q11 and Xp11 Prostate Cancer Risk Variants: Results from a Utah Pedigree-Based Study.
[PMID 18708398] Multiple novel prostate cancer predisposition loci confirmed by an international study: the PRACTICAL Consortium.
[PMID 19104501] Prostate cancer genomics: towards a new understanding.
[PMID 19318432] Generalizability of associations from prostate cancer genome-wide association studies in multiple populations.
[PMID 19366831] Analysis of recently identified prostate cancer susceptibility loci in a population-based study: associations with family history and clinical features.
[PMID 19505914] Two independent prostate cancer risk-associated Loci at 11q13.
[PMID 19567509] Genetic variants and prostate cancer risk: candidate replication and exploration of viral restriction genes.
[PMID 19639606] Correcting "winner's curse" in odds ratios from genomewide association findings for major complex human diseases.
[PMID 20690139] Meta-analysis of genome-wide and replication association studies on prostate cancer.
[PMID 21071540] Validation of genome-wide prostate cancer associations in men of African descent.
[PMID 21390317] Characterizing associations and SNP-environment interactions for GWAS-identified prostate cancer risk markers--results from BPC3.
[PMID 21445969] Significant associations of prostate cancer susceptibility variants with survival in patients treated with androgen-deprivation therapy.
[PMID 21538423] Early onset prostate cancer has a significant genetic component.
| GWAS snp | |
|---|---|
| PMID | [PMID 24740154]
|
| Trait | Prostate cancer (early onset) |
| Title | Genome-wide association scan for variants associated with early-onset prostate cancer. |
| Risk Allele | G |
| P-val | 1E-6 |
| Odds Ratio | 1.30 [NR] |
