rs5945619

Orientation

plus

Stabilized

plus

Make rs5945619(C;C)

Make rs5945619(C;T)

Make rs5945619(T;T)

Reference

GRCh38 38.1/141

Chromosome

X

Position

51498820

is a	snp
is	mentioned by
dbSNP	rs5945619
dbSNP (classic)	rs5945619
ClinGen	rs5945619
ebi	rs5945619
HLI	rs5945619
Exac	rs5945619
Gnomad	rs5945619
Varsome	rs5945619
LitVar	rs5945619
Map	rs5945619
PheGenI	rs5945619
Biobank	rs5945619
1000 genomes	rs5945619
hgdp	rs5945619
ensembl	rs5945619
geneview	rs5945619
scholar	rs5945619
google	rs5945619
pharmgkb	rs5945619
gwascentral	rs5945619
openSNP	rs5945619
23andMe	rs5945619
SNPshot	rs5945619
SNPdbe	rs5945619
MSV3d	rs5945619
GWAS Ctlg	rs5945619

GMAF

0.2618

Max Magnitude

0

?

(C;C) (C;T) (T;T)

28

cancer-genetics these snps influence genetic risk for prostate cancer

the haplotype rs6983267 rs1016343 rs4242384
rs7501939
rs1859962
rs2660753
rs9364554
rs6465657
rs10993994
rs7931342
rs2735839
rs5945619
rs10993994

[PMID 19336566 ] Replication of the 10q11 and Xp11 Prostate Cancer Risk Variants: Results from a Utah Pedigree-Based Study.

[PMID 19366831 ] Analysis of Recently Identified Prostate Cancer Susceptibility Loci in a Population-based Study: Associations with Family History and Clinical Features

GWAS snp
PMID	[PMID 18264097]
Trait	Prostate cancer
Title	Multiple newly identified loci associated with prostate cancer susceptibility
Risk Allele	C
P-val	2.0000000000000001E-9
Odds Ratio	1.19 [1.07-1.31]

[PMID 19549809 ] Fine-Mapping and Family-Based Association Analyses of Prostate Cancer Risk Variants at Xp11

OMIM	300704
Desc	PROSTATE CANCER, HEREDITARY, X-LINKED 2; HPCX2
Variant
Related	also

[PMID 18708398 ] Multiple novel prostate cancer predisposition loci confirmed by an international study: the PRACTICAL Consortium.

[PMID 18794092 ] Association of prostate cancer risk variants with clinicopathologic characteristics of the disease.

[PMID 18974127 ] Association study of prostate cancer susceptibility variants with risks of invasive ovarian, breast, and colorectal cancer.

[PMID 19104501 ] Prostate cancer genomics: towards a new understanding.

[PMID 19434657 ] Individual and cumulative effect of prostate cancer risk-associated variants on clinicopathologic variables in 5,895 prostate cancer patients.

[PMID 19549807 ] Prostate cancer risk associated loci in African Americans.

[PMID 19639606 ] Correcting "winner's curse" in odds ratios from genomewide association findings for major complex human diseases.

[PMID 20039378 ] Estimation of genotype relative risks from pedigree data by retrospective likelihoods.

[PMID 20690139] Meta-analysis of genome-wide and replication association studies on prostate cancer.

[PMID 21071540 ] Validation of genome-wide prostate cancer associations in men of African descent.

[PMID 21390317 ] Characterizing associations and SNP-environment interactions for GWAS-identified prostate cancer risk markers--results from BPC3.

[PMID 21538423 ] Early onset prostate cancer has a significant genetic component.