rs471364
From SNPedia
| Orientation | minus |
| Stabilized | minus |
| Geno | Mag | Summary |
|---|---|---|
| (A;A) | 0 | common in complete genomics |
| Make rs471364(A;G) |
| Make rs471364(G;G) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 9 |
| Position | 15289580 |
| Gene | TTC39B |
| is a | snp |
| is | mentioned by |
| dbSNP | rs471364 |
| dbSNP (classic) | rs471364 |
| ClinGen | rs471364 |
| ebi | rs471364 |
| HLI | rs471364 |
| Exac | rs471364 |
| Gnomad | rs471364 |
| Varsome | rs471364 |
| LitVar | rs471364 |
| Map | rs471364 |
| PheGenI | rs471364 |
| Biobank | rs471364 |
| 1000 genomes | rs471364 |
| hgdp | rs471364 |
| ensembl | rs471364 |
| geneview | rs471364 |
| scholar | rs471364 |
| rs471364 | |
| pharmgkb | rs471364 |
| gwascentral | rs471364 |
| openSNP | rs471364 |
| 23andMe | rs471364 |
| SNPshot | rs471364 |
| SNPdbe | rs471364 |
| MSV3d | rs471364 |
| GWAS Ctlg | rs471364 |
| GMAF | 0.1028 |
| Max Magnitude | 0 |
| ? | (A;A) (A;G) (G;G) | 28 |
|---|---|---|
|
| ||
per the 23andMe blog, the minor allele of this SNP (C) was associated with decreased HDL cholesterol
| SNP | Rarer allele | LDL | HDL | TG |
|---|---|---|---|---|
| rs6544713 | T | + | ||
| rs2650000 | A | + | ||
| rs471364 | C | - | ||
| rs1800961 | T | - | ||
| rs7679 | C | - | + | |
| rs2967605 | T | - | ||
| rs2409722 | T | - | ||
| rs10903129 | A | - | - | - |
| rs6756629 | A | - | + | - |
| rs12670798 | C | + | + | + |
| rs7395662 | A | - | + | + |
| rs174570 | T | - | - | + |
| rs2271293 | A | - | + | - |
| rs2624265 | C | + | ||
| rs2167079 | T | + | ||
| rs9891572 | T | + | ||
| rs4844614 | T | + | ||
| rs5031002 | G | + |
| GWAS snp | |
|---|---|
| PMID | [PMID 19060906 ]
|
| Trait | HDL cholesterol |
| Title | Common variants at 30 loci contribute to polygenic dyslipidemia |
| Risk Allele | C |
| P-val | 3E-10 |
| Odds Ratio | 0.08 [0.02-0.14] SD decrease |
[PMID 21738485] Genetic determinants of lipid traits in diverse populations from the population architecture using genomics and epidemiology (PAGE) study
[PMID 19951432] Analysis of recently identified dyslipidemia alleles reveals two loci that contribute to risk for carotid artery disease.
[PMID 20385826] Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).
