rs5031002
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (G;G) | 0 | common on affy axiom data |
| Make rs5031002(A;A) |
| Make rs5031002(A;G) |
| Reference | GRCh38 38.1/141 |
| Chromosome | X |
| Position | 67722783 |
| Gene | AR |
| is a | snp |
| is | mentioned by |
| dbSNP | rs5031002 |
| dbSNP (classic) | rs5031002 |
| ClinGen | rs5031002 |
| ebi | rs5031002 |
| HLI | rs5031002 |
| Exac | rs5031002 |
| Gnomad | rs5031002 |
| Varsome | rs5031002 |
| LitVar | rs5031002 |
| Map | rs5031002 |
| PheGenI | rs5031002 |
| Biobank | rs5031002 |
| 1000 genomes | rs5031002 |
| hgdp | rs5031002 |
| ensembl | rs5031002 |
| geneview | rs5031002 |
| scholar | rs5031002 |
| rs5031002 | |
| pharmgkb | rs5031002 |
| gwascentral | rs5031002 |
| openSNP | rs5031002 |
| 23andMe | rs5031002 |
| SNPshot | rs5031002 |
| SNPdbe | rs5031002 |
| MSV3d | rs5031002 |
| GWAS Ctlg | rs5031002 |
| GMAF | 0.01572 |
| Max Magnitude | 0 |
| ? | (A;A) (A;G) (G;G) | 28 |
|---|---|---|
|
| ||
Per the 23andMe blog, the minor allele of this SNP (A) was associated with increased LDL cholesterol (wrong allele listed on the 23andMe blog)
| SNP | Rarer allele | LDL | HDL | TG |
|---|---|---|---|---|
| rs6544713 | T | + | ||
| rs2650000 | A | + | ||
| rs471364 | C | - | ||
| rs1800961 | T | - | ||
| rs7679 | C | - | + | |
| rs2967605 | T | - | ||
| rs2409722 | T | - | ||
| rs10903129 | A | - | - | - |
| rs6756629 | A | - | + | - |
| rs12670798 | C | + | + | + |
| rs7395662 | A | - | + | + |
| rs174570 | T | - | - | + |
| rs2271293 | A | - | + | - |
| rs2624265 | C | + | ||
| rs2167079 | T | + | ||
| rs9891572 | T | + | ||
| rs4844614 | T | + | ||
| rs5031002 | A | + |
| GWAS snp | |
|---|---|
| PMID | [PMID 19060910 ]
|
| Trait | LDL cholesterol |
| Title | Genome-wide association analysis of metabolic traits in a birth cohort from a founder population |
| Risk Allele | A |
| P-val | 2E-7 |
| Odds Ratio | 0.30 [0.18-0.41] mmol/l increase |
