rs10903129
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Make rs10903129(A;A) |
| Make rs10903129(A;G) |
| Make rs10903129(G;G) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 1 |
| Position | 25442446 |
| Gene | TMEM57 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs10903129 |
| dbSNP (classic) | rs10903129 |
| ClinGen | rs10903129 |
| ebi | rs10903129 |
| HLI | rs10903129 |
| Exac | rs10903129 |
| Gnomad | rs10903129 |
| Varsome | rs10903129 |
| LitVar | rs10903129 |
| Map | rs10903129 |
| PheGenI | rs10903129 |
| Biobank | rs10903129 |
| 1000 genomes | rs10903129 |
| hgdp | rs10903129 |
| ensembl | rs10903129 |
| geneview | rs10903129 |
| scholar | rs10903129 |
| rs10903129 | |
| pharmgkb | rs10903129 |
| gwascentral | rs10903129 |
| openSNP | rs10903129 |
| 23andMe | rs10903129 |
| SNPshot | rs10903129 |
| SNPdbe | rs10903129 |
| MSV3d | rs10903129 |
| GWAS Ctlg | rs10903129 |
| GMAF | 0.4959 |
| Max Magnitude | 0 |
| ? | (A;A) (A;G) (G;G) | 28 |
|---|---|---|
|
| ||
per the 23andMe blog, the minor allele of this SNP (A) was associated with decreased cholesterol and triglycerides
| SNP | Rarer allele | LDL | HDL | TG |
|---|---|---|---|---|
| rs6544713 | T | + | ||
| rs2650000 | A | + | ||
| rs471364 | C | - | ||
| rs1800961 | T | - | ||
| rs7679 | C | - | + | |
| rs2967605 | T | - | ||
| rs2409722 | T | - | ||
| rs10903129 | A | - | - | - |
| rs6756629 | A | - | + | - |
| rs12670798 | C | + | + | + |
| rs7395662 | A | - | + | + |
| rs174570 | T | - | - | + |
| rs2271293 | A | - | + | - |
| rs2624265 | C | + | ||
| rs2167079 | T | + | ||
| rs9891572 | T | + | ||
| rs4844614 | T | + | ||
| rs5031002 | G | + |
| GWAS snp | |
|---|---|
| PMID | [PMID 19060911 ]
|
| Trait | Cholesterol, total |
| Title | Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts |
| Risk Allele | G |
| P-val | 5E-10 |
| Odds Ratio | 0.06 [NR] SD increase |
| GWAS snp | |
|---|---|
| PMID | [PMID 21700265]
|
| Trait | |
| Title | Complement receptor 1 gene variants are associated with erythrocyte sedimentation rate. |
| Risk Allele | |
| P-val | 5E-13 |
| Odds Ratio | 0.1000 [NR] unit decrease |
[PMID 20084173] Magnitude of stratification in human populations and impacts on genome wide association studies.
[PMID 21304891] A study of CNVs as trait-associated polymorphisms and as expression quantitative trait loci.
[PMID 23856853] Association of a complement receptor 1 gene variant with baseline erythrocyte sedimentation rate levels in patients starting anti-TNF therapy in a UK rheumatoid arthritis cohort: results from the Biologics in Rheumatoid Arthritis Genetics and Genomics Study Syndicate cohort.
